Optical cohrence tomography (OCT)

Application and development of ultrafast MHz OCT systems

OCT is a noninvasive Imaging modality which is typically used for high resolution (~10µm), three dimensional imaging of scattering tissue. By using home built FDML laser technology we achieve imaging speeds of several million depth scans per second, which is one to two orders of magnitude higher than current commercially available systems (MHz-OCT).

These high imaging speeds already proved to be very useful in clinical applications, by reducing acquisition times and therefore reducing motion artifacts. But the high speed also gives access to the phase of the detected light and will thus allow the use of new numerical approaches for image quality enhancement and functional imaging with Swept-Source-OCT.

Our working group is conducting research in the field of OCT to develop new technologies and to identify possible fields of application.

The focus areas are:

  • MHz-OCT - Ultra-fast OCT imaging with several million depth scans per second
  • LARA-OCT - Large area robotically assisted OCT
  • VR-OCT - Real-time computation and rendering of entire OCT volumes in a virtual environment
  • Eye OCT - application of MHz-OCT to the eye for visualization of the retina or the anterior segment of the eye
  • Phase sensitive OCT - enhancement of the information content of an OCT image by adding phase contrast
  • Multispectral OCT - combination of RGB and OCT images for improved visualization of morphological structures

related Publications

2012

Thomas Klein, Wolfgang Wieser, Raphael André, Tom Pfeiffer, Christoph M. Eigenwillig, and Robert Huber,
Multi-MHz FDML OCT: snapshot retinal imaging at 6.7 million axial-scans per second, in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI , Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin, Eds. SPIE, Feb.2012. pp. 82131E.
DOI:10.1117/12.908798
Bibtex: BibTeX
@inproceedings{10.1117/12.908798,
author = {Thomas Klein and Wolfgang Wieser and Raphael Andr{\'e} and Tom Pfeiffer and Christoph M. Eigenwillig and Robert Huber},
title = {{Multi-MHz FDML OCT: snapshot retinal imaging at 6.7 million axial-scans per second}},
volume = {8213},
booktitle = {Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI},
editor = {Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {82131E},
abstract = {We demonstrate the acquisition of densely sampled wide-field 3D OCT datasets of the human retina in 0.3s. This
performance is achieved with a multi-MHz Fourier domain mode-locked (FDML) laser source operating at 1050nm. A two-beam
setup doubles the 3.35MHz laser sweep rate to 6.7MHz, which is 16x faster than results achieved with any non-FDML
source used for retinal OCT. We discuss two main benefits of these high line rates: First, large datasets over an ultra-wide
field of view can be acquired with a low probability of distortions. Second, even if eye movements occur, now the scan rate
is high enough to directly correct even the fastest saccades without loss of information.},
keywords = {Optical coherence tomography, OCT, MHz OCT, Fourier-domain mode-locking, FDML, retinal imaging},
year = {2012},
doi = {10.1117/12.908798},
URL = {https://doi.org/10.1117/12.908798}
}
Cedric Blatter, Branislav Grajciar, Robert Huber, and Rainer Leitgeb,
Deep skin structural and microcirculation imaging with extended-focus OCT, in Photonic Therapeutics and Diagnostics VIII , SPIE, Feb.2012. pp. 82070B.
DOI:10.1117/12.909830
Bibtex: BibTeX
@inproceedings{10.1117/12.909830,
author = {Cedric Blatter and Branislav Grajciar and Robert Huber and Rainer A. Leitgeb},
title = {{Deep skin structural and microcirculation imaging with extended-focus OCT}},
volume = {8207},
booktitle = {Photonic Therapeutics and Diagnostics VIII},
editor = {Anita Mahadevan-Jansen and E. Duco Jansen and Andreas Mandelis and Kenton W. Gregory M.D. and Guillermo J. Tearney M.D. and Laura Marcu and Nikiforos Kollias and Bernard Choi and Haishan Zeng and Melissa J. Suter and Stephen Lam and Matthew Brenner and Hyun Wook Kang and Bodo E. Knudsen M.D. and Henry Hirschberg M.D. and Steen Madsen and Brian Jet-Fei Wong M.D. and Justus F. Ilgner M.D. and Krzysztof Izdebski},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {82070B},
abstract = {We present an extended focus OCT system for dermatologic applications that maintains high lateral resolution over a
large depth range by using Bessel beam illumination. More, Bessel beams exhibit a self-reconstruction property that is
particularly useful to avoid shadowing from surface structures such as hairs. High lateral resolution and high-speed
measurement, thanks to a rapidly tuning swept source, allows not only for imaging of small skin structures in depth but
also for comprehensive visualization of the small capillary network within the human skin in-vivo. We use this
information for studying temporal vaso-responses to hypothermia. In contrast to other perfusion imaging methods such
as laser Doppler imaging (LDI), OCT gives specific access to vascular responses in different vascular beds in depth.},
keywords = {Optical Coherence Tomography, FDML Swept Source, Extended focus, Bessel beam, Self-reconstruction property, Microcirculation imaging, Vasomechanics},
year = {2012},
doi = {10.1117/12.909830},
URL = {https://doi.org/10.1117/12.909830}
}
Desmond C. Adler, Wolfgang Wieser, Francois Trepanier, Joseph M. Schmitt, and Robert Huber,
Coherence length extension of Fourier domain mode locked lasers, in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI , Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin, Eds. SPIE, Feb.2012. pp. 82130O.
DOI:10.1117/12.908148
Bibtex: BibTeX
@inproceedings{10.1117/12.908148,
author = {Desmond C. Adler and Wolfgang Wieser and Francois Trepanier and Joseph M. Schmitt and Robert A. Huber},
title = {{Coherence length extension of Fourier domain mode locked lasers}},
volume = {8213},
booktitle = {Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI},
editor = {Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {82130O},
abstract = {Fourier domain mode locked (FDML) lasers provide high sweep rates, broad tuning ranges, and high output powers for
optical coherence tomography (OCT) systems. However, presently-known FDML lasers at 1300 nm have relatively
short coherence lengths, limiting the size of samples that can be imaged. Furthermore, FDML lasers produce only one
useable sweep direction. We report FDML coherence length extension by incorporating advanced dispersion
compensation modules (DCMs). DCMs eliminate group velocity dispersion in the cavity, doubling coherence lengths
and ensuring uniform axial resolution over the imaging range. Additionally, forward and backward sweeps are nearly
identical, removing the need for external buffering stages.},
keywords = {Fourier domain mode locked lasers, FDML, swept source, optical coherence tomography, dispersion compensation},
year = {2012},
doi = {10.1117/12.908148},
URL = {https://doi.org/10.1117/12.908148}
}
Cedric Blatter, Branislav Grajciar, Boris Hermann, Robert Huber, Wolfgang Drexler, and Rainer A. Leitgeb,
Simultaneous dark-bright field swept source OCT for ultrasound detection, in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI , Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin, Eds. SPIE, Feb.2012. pp. 82131M.
DOI:10.1117/12.911443
Bibtex: BibTeX
@inproceedings{10.1117/12.911443,
author = {Cedric Blatter and Branislav Grajciar and Boris Hermann and Robert Huber and Wolfgang Drexler and Rainer A. Leitgeb},
title = {{Simultaneous dark-bright field swept source OCT for ultrasound detection}},
volume = {8213},
booktitle = {Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVI},
editor = {Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {82131M},
abstract = {We introduce a swept source FDOCT imaging system that allows measuring simultaneously the reflected light and
scattered light (bright field) and the scattered light only (dark field) in two different channels through separate Gaussian
and Bessel detection. Specular reflections can then be used to obtain knowledge about the sample time evolution with
high SNR for phase analysis. Based on this configuration, we provide a proof-of principle study for resolving ultrasound
pulse trains with high temporal resolution on surfaces, which potentially provides a novel phase sensitive all optical
detection scheme for the combination of OCT with photoacoustic imaging.},
keywords = {Dark field imaging, Bessel beam, Extended focus, FDML Swept Source, Multichannel detection, Photoacoustic, Ultrasound, Phase sensitive},
year = {2012},
doi = {10.1117/12.911443},
URL = {https://doi.org/10.1117/12.911443}
}
Thomas Klein, Wolfgang Wieser, and Robert Huber,
OPTICAL COHERENCE TOMOGRAPHY/HIGH-SPEED BIOMEDICAL IMAGING: No speed limit: The multi-megahertz approach to optical coherence tomography, BioOptics World , vol. 5, no. 1, pp. 28-32, Jan. 2012.
Weblink: https://www.laserfocusworld.com/biooptics/bioimaging/fluorescence/article/14190880/optical-coherence-tomographyhighspeed-biomedical-imaging-no-speed-limit-the-multimegahertz-approach-to-optical-coherence-tomography
Bibtex: BibTeX
@Article{HU_2012_Klein_a,
  Title                    = {{OPTICAL COHERENCE TOMOGRAPHY/HIGH-SPEED BIOMEDICAL IMAGING: No speed limit: The multi-megahertz approach to optical coherence tomography}},
  Author                   = {Klein, Thomas and Wieser, Wolfgang and Huber, Robert},
  Journal                  = {BioOptics World},
  Year                     = {2012},
  Number                   = {1},
  Pages                    = {28--32},
  Volume                   = {5},
keywords = {AG-Huber_FDML, AG-Huber_OCT},
  Doi                      = {http://www.bioopticsworld.com/articles/print/volume-5/issue-1/features/the-multi-megahertz-approach-to-optical-coherence-tomography.html},
  Url                      = {http://www.bioopticsworld.com/articles/print/volume-5/issue-1/features/the-multi-megahertz-approach-to-optical-coherence-tomography.html}
}

2011

Christoph M. Eigenwillig, Thomas Klein, Wolfgang Wieser, Benjamin R. Biedermann, and Robert Huber,
Wavelength swept amplified spontaneous emission source for high speed retinal optical coherence tomography at 1060 nm, Journal of Biophotonics , vol. 4, no. 7-8, pp. 552-558, Nov. 2011.
DOI:10.1002/jbio.201000104
Bibtex: BibTeX
@article{https://doi.org/10.1002/jbio.201000104,
author = {Eigenwillig, Christoph M. and Klein, Thomas and Wieser, Wolfgang and Biedermann, Benjamin R. and Huber, Robert},
title = {Wavelength swept amplified spontaneous emission source for high speed retinal optical coherence tomography at 1060 nm},
journal = {Journal of Biophotonics},
volume = {4},
number = {7-8},
pages = {552-558},
keywords = {optical coherence tomography, tunable lasers, optical frequency domain imaging, ophthalmology},
doi = {https://doi.org/10.1002/jbio.201000104},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jbio.201000104},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/jbio.201000104},
abstract = {Abstract The wavelength swept amplified spontaneous emission (ASE) source presented in this paper is an alternative approach to realize a light source for high speed swept source optical coherence tomography (OCT). ASE alternately passes a cascade of different optical gain elements and tunable optical bandpass filters. In this work we show for the first time a wavelength swept ASE source in the 1060 nm wavelength range, enabling high speed retinal OCT imaging. We demonstrate ultra-rapid retinal OCT at a line rate of 170 kHz, a record sweep rate at 1060 nm of 340 kHz with 70 nm full sweep width, enabling an axial resolution of 11 μm. Two different implementations of the source are characterized and compared to each other. The last gain element is either a semiconductor optical amplifier or an Ytterbium-doped fibre amplifier enabling high average output power of >40 mW. Various biophotonic imaging examples provide a wide range of quality benchmarks achievable with such sources. (© 2011 WILEY-VCH Verlag GmbH \& Co. KGaA, Weinheim)},
year = {2011}
}

Desmond C. Adler, Wolfgang Wieser, Francois Trepanier, Joseph M. Schmitt, and Robert Huber,
Extended coherence length Fourier domain mode locked lasers at 1310 nm, Opt. Express , vol. 19, no. 21, pp. 20930--20939, Oct. 2011. Optica Publishing Group.
DOI:10.1364/OE.19.020930
Bibtex: BibTeX
@article{Adler:11,
author = {Desmond C. Adler and Wolfgang Wieser and Francois Trepanier and Joseph M. Schmitt and Robert A. Huber},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Lasers, tunable; Medical optics and biotechnology; Dispersion compensation devices ; Fiber Bragg gratings ; Laser modes; Laser sources; Mode locking; Optical delay lines; Swept lasers; Tunable lasers},
number = {21},
pages = {20930--20939},
publisher = {Optica Publishing Group},
title = {Extended coherence length Fourier domain mode locked lasers at 1310 nm},
volume = {19},
month = {Oct},
year = {2011},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-19-21-20930},
doi = {10.1364/OE.19.020930},
abstract = {Fourier domain mode locked (FDML) lasers are excellent tunable laser sources for frequency domain optical coherence tomography (FD-OCT) systems due to their combination of high sweep rates, large tuning ranges, and high output powers. However, conventional FDML lasers provide coherence lengths of only 4--10 mm, limiting their use in demanding applications such as intravascular OCT where coherence lengths of \>20 mm are required for optimal imaging of large blood vessels. Furthermore, like most swept lasers, conventional FDML lasers produce only one useable sweep direction per tunable filter drive cycle, halving the effective sweep rate of the laser compared to the filter drive frequency. Here, we demonstrate a new class of FDML laser incorporating broadband dispersion compensation near 1310 nm. Elimination of chromatic dispersion in the FDML cavity results in the generation of forward (short to long wavelength) and backward (long to short wavelength) sweeps with substantially identical properties and coherence lengths of \>21 mm. This advance enables long-range, high-speed FD-OCT imaging without the need for optical buffering stages, significantly reducing laser cost and complexity.},
}
Cedric Blatter, Branislav Grajciar, Christoph M. Eigenwillig, Wolfgang Wieser, Benjamin R. Biedermann, Robert Huber, and Rainer A. Leitgeb,
Extended focus high-speed swept source OCT with self-reconstructive illumination, Opt. Express , vol. 19, no. 13, pp. 12141-12155, Jun. 2011. Optica Publishing Group.
DOI:10.1364/OE.19.012141
Bibtex: BibTeX
@article{Blatter:11,
author = {Cedric Blatter and Branislav Grajciar and Christoph M. Eigenwillig and Wolfgang Wieser and Benjamin R. Biedermann and Robert Huber and Rainer A. Leitgeb},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Optical coherence tomography; Flow diagnostics; Coherence tomography ; Functional monitoring and imaging ; Functional imaging; Image quality; Imaging techniques; In vivo imaging; Optical imaging; Three dimensional imaging},
number = {13},
pages = {12141--12155},
publisher = {Optica Publishing Group},
title = {Extended focus high-speed swept source OCT with self-reconstructive illumination},
volume = {19},
month = {Jun},
year = {2011},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-19-13-12141},
doi = {10.1364/OE.19.012141},
abstract = {We present a Bessel beam illumination FDOCT setup using a FDML Swept Source at 1300nm with up to 440kHz A-scan rate, and discuss its advantages for structural and functional imaging of highly scattering samples. An extended focus is achieved due to the Bessel beam that preserves its lateral extend over a large depth range. Furthermore, Bessel beams exhibit a self-reconstruction property that allows imaging even behind obstacles such as hairs on skin. Decoupling the illumination from the Gaussian detection increases the global sensitivity and enables dark field imaging. Dark field imaging is useful to avoid strong reflexes from the sample surface that adversely affect the sensitivity due to the limited dynamic range of high speed 8bit acquisition cards. In addition the possibility of contrasting capillaries with high sensitivity is shown, using inter-B-scan speckle variance analysis. We demonstrate intrinsic advantages of the extended focus configuration, in particular the reduction of the phase decorrelation effect below vessels leading to improved axial vessel definition.},
}
Thomas Klein, Wolfgang Wieser, Benjamin R. Biedermann, Christoph M. Eigenwillig, and Robert Huber,
FDML laser for megahertz retinal OCT imaging, in CLEO:2011 - Laser Applications to Photonic Applications , Optica Publishing Group, Jun.2011. pp. CWB1.
DOI:10.1364/CLEO_SI.2011.CWB1
Bibtex: BibTeX
@inproceedings{Klein:11,
author = {Thomas Klein and Wolfgang Wieser and Benjamin R. Biedermann and Christoph M. Eigenwillig and Robert Huber},
booktitle = {CLEO:2011 - Laser Applications to Photonic Applications},
journal = {CLEO:2011 - Laser Applications to Photonic Applications},
keywords = {Optical coherence tomography; Lasers, tunable; Image quality; Imaging techniques; Laser modes; Medical imaging; Mode locking; Optical coherence tomography},
pages = {CWB1},
publisher = {Optica Publishing Group},
title = {FDML laser for megahertz retinal OCT imaging},
year = {2011},
url = {https://opg.optica.org/abstract.cfm?URI=CLEO_SI-2011-CWB1},
doi = {10.1364/CLEO_SI.2011.CWB1},
abstract = {A novel Fourier-domain mode locked (FDML) laser design is presented, yielding the highest wavelength sweep speed reported so far around 1050nm. This enables retinal imaging over a ~70{\textdegree} ultra-wide field of view.},
}
Cedric Blatter, Branislav Grajciar, Robert Huber, and Rainer A. Leitgeb,
Structural and functional imaging with extended focus dark-field OCT at 1300nm, in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV , James G. Fujimoto and Joseph A. Izatt and Valery V. Tuchin, Eds. SPIE, Feb.2011. pp. 78891D.
DOI:10.1117/12.875594
Bibtex: BibTeX
@inproceedings{10.1117/12.875594,
author = {Cedric Blatter and Branislav Grajciar and Robert Huber and Rainer A. Leitgeb},
title = {{Structural and functional imaging with extended focus dark-field OCT at 1300nm}},
volume = {7889},
booktitle = {Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV},
editor = {James G. Fujimoto and Joseph A. Izatt and Valery V. Tuchin},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {78891D},
abstract = {We present an extended focus FDOCT setup with FDML swept source centered at 1310nm. The illumination, preserving
its lateral extend over a large depth range thanks to the use of a Bessel beam, is decoupled from the Gaussian detection in
order to increase the global sensitivity. The efficient spatial separation enables dark-field imaging. In-vivo measurements
in the skin were performed to demonstrate the gain in lateral resolution while preserving the imaging depth. More, the
calculation of the speckle variance between B-Scans allows a clear visualization of the microvasculature.},
keywords = {Extended focus, Dark Field imaging, Bessel beam, FDML Swept Source, dermatology, microvascularisation imaging},
year = {2011},
doi = {10.1117/12.875594},
URL = {https://doi.org/10.1117/12.875594}
}
Thomas Klein, Wolfgang Wieser, Christoph M. Eigenwillig, Benjamin R. Biedermann, and Robert Huber,
Megahertz OCT for ultrawide-field retinal imaging with a 1050 nm Fourier domain mode-locked laser, Opt. Express , vol. 19, no. 4, pp. 3044--3062, Feb. 2011. Optica Publishing Group.
DOI:10.1364/OE.19.003044
Bibtex: BibTeX
@article{Klein:11,
author = {Thomas Klein and Wolfgang Wieser and Christoph M. Eigenwillig and Benjamin R. Biedermann and Robert Huber},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Lasers, tunable; Imaging systems; Ophthalmology; Optical coherence tomography; Retina scanning ; Fiber lasers; Image processing; Image quality; Mode locking; Ophthalmic imaging; Three dimensional imaging},
number = {4},
pages = {3044--3062},
publisher = {Optica Publishing Group},
title = {Megahertz OCT for ultrawide-field retinal imaging with a 1050nm Fourier domain mode-locked laser},
volume = {19},
month = {Feb},
year = {2011},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-19-4-3044},
doi = {10.1364/OE.19.003044},
abstract = {We demonstrate ultrahigh speed swept source retinal OCT imaging using a Fourier domain mode locked (FDML) laser. The laser uses a combination of a semiconductor optical amplifier and an ytterbium doped fiber amplifier to provide more than 50mW output power. The 1050nm FDML laser uses standard telecom fiber for the km long delay line instead of two orders of magnitude more expensive real single mode fiber. We investigate the influence of this ``oligo-mode'' fiber on the FDML laser performance. Two design configurations with 684,400 and 1,368,700 axial scans per second are investigated, 25x and 50x faster than current commercial instruments and more than 4x faster than previous single spot ophthalmic results. These high speeds enable the acquisition of densely sampled ultrawide-field data sets of the retina within a few seconds. Ultrawide-field data consisting of 1900 x 1900 A-scans with ~70{\textdegree} degrees angle of view are acquired within only 3 and 6 seconds using the different setups. Such OCT data sets, more than double as large as previously reported, are collapsed to a 4 megapixel high definition fundus image. We achieve good penetration into the choroid by hardware spectral shaping of the laser output. The axial resolution in tissue is 12{\textmu}m (684kHz) and 19{\textmu}m (1.37MHz). A series of new data processing and imaging extraction protocols, enabled by the ultrawide-field isotropic data sets, are presented. Dense isotropic sampling enables both, cross-sectional images along arbitrary coordinates and depth-resolved en-face fundus images. Additionally, we investigate how isotropic averaging compares to the averaging of cross-sections along the slow axis.},
}
Aneesh Alex, Jessika Weingast, Bernd Hofer, Matthias Eibl, Michael Binder, Hubert Pehamberger, Wolfgang Drexler, and Boris Považay,
3D optical coherence tomography for clinical diagnosis of nonmelanoma skin cancers, Imaging in Medicine , vol. 3, no. 6, pp. 653-674, 2011.
Weblink: https://www.openaccessjournals.com/articles/3d-optical-coherence-tomography-for-clinical-diagnosis-of-nonmelanoma-skin-cancers-9179.html
Bibtex: BibTeX
@article{Alex2011,
   author = {Alex, A. and Weingast, J. and Hofer, B. and Eibl, M. and Binder, M. and Pehamberger, H. and Drexler, W. and Považay, B.},
   title = {3D optical coherence tomography for clinical diagnosis of nonmelanoma skin cancers},
   journal = {Imaging in Medicine},
   volume = {3},
   number = {6},
   keyword = {cancer diagnosis, contrast-enhanced imaging, dermatology, functional imaging,microscopy, multimodal imaging, optical coherence tomography, optical imaging, tomography},
  abstract = {High-resolution frequency domain optical coherence tomography (OCT) stands out amongst a range of novel dermatologic imaging technologies, with its good detection sensitivity around-100 dB, high measurement speeds allowing real-time image acquisition and its ability to acquire high definition cross-sectional and 3D tomograms of regions greater than 1 cm2, providing tissue information comparable to conventional histopathology without the need for any contrast agents. Typical axial and transverse resolutions of state-of-the-art OCT systems range between 1-10 m and approximately 20 m, respectively, depending on the employed wavelength region. This review investigates the significant progress accomplished in the field of dermatologic OCT with respect to other in vivo diagnostic methods for pre-excisional imaging of nonmelanoma skin cancers and specifically emphasizes state-of-the-art results achieved in different clinical pilot studies. Further technological extensions of OCT, various multimodal imaging approaches as well as potential clinical dermatologic applications are discussed. © 2011 Future Medicine Ltd.},
   pages = {653-674},
   url = {https://www.openaccessjournals.com/articles/3d-optical-coherence-tomography-for-clinical-diagnosis-of-nonmelanoma-skin-cancers-9179.html},
   year = {2011},
keywords = {AG-Huber, OCT},
   type = {Journal Article}
}

2010

Wolfgang Wieser, Benjamin R. Biedermann, Thomas Klein, Christoph M. Eigenwillig, and Robert Huber,
High-Quality 3-D Imaging with Multimegahertz OCT, Opt. Photon. News , vol. 21, no. 12, pp. 28-29, Dec. 2010. Optica Publishing Group.
DOI:10.1364/OPN.21.12.000028
Bibtex: BibTeX
@article{Wieser:10,
author = {Wolfgang Wieser and Benjamin R. Biedermann and Thomas Klein and Christoph M. Eigenwillig and Robert Huber},
journal = {Opt. Photon. News},
keywords = {General; Analog to digital converters; Crystallography; Image quality; Optical coherence tomography; Real time imaging; Three dimensional imaging},
number = {12},
pages = {28--28},
publisher = {Optica Publishing Group},
title = {High-Quality 3-D Imaging withMultimegahertz OCT},
volume = {21},
month = {Dec},
year = {2010},
url = {https://www.optica-opn.org/abstract.cfm?URI=opn-21-12-28},
doi = {10.1364/OPN.21.12.000028},
abstract = {We have developed interferometric systems to measure nanosize structures and freeze their motion in time. Researchers have also suggested a method to extract both phase and amplitude information for crystallography.},
}
Benjamin R. Biedermann, Wolfgang Wieser, Christoph M. Eigenwillig, Thomas Klein, and Robert Huber,
Direct measurement of the instantaneous linewidth of rapidly wavelength-swept lasers, Opt. Lett. , vol. 35, no. 22, pp. 3733-3735, Nov. 2010. Optica Publishing Group.
DOI:10.1364/OL.35.003733
Bibtex: BibTeX
@article{Biedermann:10,
author = {Benjamin R. Biedermann and Wolfgang Wieser and Christoph M. Eigenwillig and Thomas Klein and Robert Huber},
journal = {Opt. Lett.},
keywords = {Optical coherence tomography; Lasers, tunable; Electrooptical modulators; Fourier transforms; Laser light; Laser sources; Optical coherence tomography; Swept lasers},
number = {22},
pages = {3733--3735},
publisher = {Optica Publishing Group},
title = {Direct measurement of the instantaneous linewidth of rapidly wavelength-swept lasers},
volume = {35},
month = {Nov},
year = {2010},
url = {https://opg.optica.org/ol/abstract.cfm?URI=ol-35-22-3733},
doi = {10.1364/OL.35.003733},
abstract = {The instantaneous linewidth of rapidly wavelength-swept laser sources as used for optical coherence tomography (OCT) is of crucial interest for a deeper understanding of physical effects involved in their operation. Swept lasers for OCT, typically sweeping over ~15 THz in ~10$\mu$s, have linewidths of several gigahertz. The high optical-frequency sweep speed makes it impossible to measure the instantaneous spectrum with standard methods. Hence, up to now, experimental access to the instantaneous linewidth was rather indirect by the inverse Fourier transform of the coherence decay. In this Letter, we present a method by fast synchronous time gating and extraction of a ``snapshot'' of the instantaneous spectrum with an electro-optic modulator, which can subsequently be measured with an optical spectrum analyzer. This new method is analyzed in detail, and systematic artifacts, such as sideband generation due to the modulation and residual wavelength uncertainty due to the sweeping operation, are quantified. The method is checked for consistency with results from the common, more indirect measurement via coherence properties.},
}
Sebastian Marschall, Thomas Klein, Wolfgang Wieser, Benjamin R. Biedermann, Kevin Hsu, Kim P. Hansen, Bernd Sumpf, Karl-Heinz Hasler, Götz Erbert, Ole B. Jensen, Christian Pedersen, Robert Huber, and Peter E. Andersen,
Fourier domain mode-locked swept source at 1050 nm based on a tapered amplifier, Opt. Express , vol. 18, no. 15, pp. 15820-15831, Jul. 2010. Optica Publishing Group.
DOI:10.1364/OE.18.015820
Bibtex: BibTeX
@article{Marschall:10,
author = {Sebastian Marschall and Thomas Klein and Wolfgang Wieser and Benjamin R. Biedermann and Kevin Hsu and Kim P. Hansen and Bernd Sumpf and Karl-Heinz Hasler and G\"{o}tz Erbert and Ole B. Jensen and Christian Pedersen and Robert Huber and Peter E. Andersen},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Lasers, tunable; Semiconductor lasers; Semiconductor optical amplifiers; Dispersion; High speed imaging; Laser light; Optical delay lines; Optical fibers; Optical standards; Swept sources},
number = {15},
pages = {15820--15831},
publisher = {Optica Publishing Group},
title = {Fourier domain mode-locked swept source at 1050 nm based on a tapered amplifier},
volume = {18},
month = {Jul},
year = {2010},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-18-15-15820},
doi = {10.1364/OE.18.015820},
abstract = {While swept source optical coherence tomography (OCT) in the 1050 nm range is promising for retinal imaging, there are certain challenges. Conventional semiconductor gain media have limited output power, and the performance of high-speed Fourier domain mode-locked (FDML) lasers suffers from chromatic dispersion in standard optical fiber. We developed a novel light source with a tapered amplifier as gain medium, and investigated the FDML performance comparing two fiber delay lines with different dispersion properties. We introduced an additional gain element into the resonator, and thereby achieved stable FDML operation, exploiting the full bandwidth of the tapered amplifier despite high dispersion. The light source operates at a repetition rate of 116 kHz with an effective average output power in excess of 30 mW. With a total sweep range of 70 nm, we achieved an axial resolution of 15 {\textmu}m in air (~11 {\textmu}m in tissue) in OCT measurements. As our work shows, tapered amplifiers are suitable gain media for swept sources at 1050 nm with increased output power, while high gain counteracts dispersion effects in an FDML laser.},
}
Wolfgang Wieser, Benjamin R. Biedermann, Thomas Klein, Christoph M. Eigenwillig, and Robert Huber,
Multi-megahertz OCT: High quality 3D imaging at 20 million A-scans and 4.5 GVoxels per second, Opt. Express , vol. 18, no. 14, pp. 14685-14704, Jul. 2010. Optica Publishing Group.
DOI:10.1364/OE.18.014685
Bibtex: BibTeX
@article{Wieser:10,
author = {Wolfgang Wieser and Benjamin R. Biedermann and Thomas Klein and Christoph M. Eigenwillig and Robert Huber},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Three-dimensional image acquisition; Lasers, tunable; Optical coherence tomography; Biological imaging; High speed imaging; Image processing algorithms; Image quality; Point spread function; Three dimensional imaging},
number = {14},
pages = {14685--14704},
publisher = {Optica Publishing Group},
title = {Multi-Megahertz OCT: High quality 3D imaging at 20 million A-scans and 4.5 GVoxels per second},
volume = {18},
month = {Jul},
year = {2010},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-18-14-14685},
doi = {10.1364/OE.18.014685},
abstract = {We present ultra high speed optical coherence tomography (OCT) with multi-megahertz line rates and investigate the achievable image quality. The presented system is a swept source OCT setup using a Fourier domain mode locked (FDML) laser. Three different FDML-based swept laser sources with sweep rates of 1, 2.6 and 5.2MHz are compared. Imaging with 4 spots in parallel quadruples the effective speed, enabling depth scan rates as high as 20.8 million lines per second. Each setup provides at least 98dB sensitivity and ~10{\textmu}m resolution in tissue. High quality 2D and 3D imaging of biological samples is demonstrated at full scan speed. A discussion about how to best specify OCT imaging speed is included. The connection between voxel rate, line rate, frame rate and hardware performance of the OCT setup such as sample rate, analog bandwidth, coherence length, acquisition dead-time and scanner duty cycle is provided. Finally, suitable averaging protocols to further increase image quality are discussed.},
}
Sebastian Marschall, Thomas Klein, Wolfgang Wieser, Benjamin R. Biedermann, Kevin Hsu, Bernd Sumpf, Karl-Heinz Hasler, Götz Erbert, Ole B. Jensen, Christian Pedersen, Robert Huber, and Peter E. Andersen,
High-power FDML laser for swept source-OCT at 1060 nm, in Biophotonics: Photonic Solutions for Better Health Care II , Jürgen Popp and Wolfgang Drexler and Valery V. Tuchin and Dennis L. Matthews, Eds. SPIE, May2010. pp. 77150B.
DOI:10.1117/12.854238
Bibtex: BibTeX
@inproceedings{10.1117/12.854238,
author = {Sebastian Marschall and Thomas Klein and Wolfgang Wieser and Benjamin Biedermann and Kevin Hsu and Bernd Sumpf and Karl-Heinz Hasler and G{\"o}tz Erbert and Ole B. Jensen and Christian Pedersen and Robert Huber and Peter E. Andersen},
title = {{High-power FDML laser for swept source-OCT at 1060 nm}},
volume = {7715},
booktitle = {Biophotonics: Photonic Solutions for Better Health Care II},
editor = {J{\"u}rgen Popp and Wolfgang Drexler and Valery V. Tuchin and Dennis L. Matthews},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {77150B},
abstract = {We present a novel frequency-swept light source working at 1060nm that utilizes a tapered amplifier as gain
medium. These devices feature significantly higher saturation power than conventional semiconductor optical
amplifiers and can thus improve the limited output power of swept sources in this wavelength range. We
demonstrate that a tapered amplifier can be integrated into a 
fiber-based swept source and allows for high-speed
FDML operation. The developed light source operates at a sweep rate of 116kHz with an effective average
output power in excess of 30mW. With a total sweep range of 70 nm an axial resolution of 15 μm in air (~11μm
in tissue) for OCT applications can be achieved.},
keywords = {optical coherence tomography, swept source, tunable laser, tapered amplifier, fourier domain mode-locking},
year = {2010},
doi = {10.1117/12.854238},
URL = {https://doi.org/10.1117/12.854238}
}
Sebastian Todor, Christian Jirauschek, Benjamin R. Biedermann, and Robert Huber,
Linewidth Optimization of Fourier Domain Mode-Locked Lasers, Conference on Lasers and Electro-Optics 2010 , pp. CMW7, May 2010. Optica Publishing Group.
DOI:10.1364/CLEO.2010.CMW7
Bibtex: BibTeX
@inproceedings{Todor:10,
author = {Sebastian Todor and Christian Jirauschek and Benjamin Biedermann and Robert Huber},
booktitle = {Conference on Lasers and Electro-Optics 2010},
journal = {Conference on Lasers and Electro-Optics 2010},
keywords = {Lasers and laser optics; Laser theory; Lasers, tunable; Laser light; Laser operation; Mode locking; Optical amplifiers; Self phase modulation; Tunable lasers},
pages = {CMW7},
publisher = {Optica Publishing Group},
title = {Linewidth Optimization of Fourier Domain Mode-Locked Lasers},
year = {2010},
url = {https://opg.optica.org/abstract.cfm?URI=CLEO-2010-CMW7},
doi = {10.1364/CLEO.2010.CMW7},
abstract = {We theoretically and experimentally investigate the instantaneous linewidth of Fourier domain mode-locked lasers, yielding good agreement. Based on simulations, strategies are discussed to drastically reduce the laser linewidth.},
}
Sebastian Marschall, Thomas Klein, Wolfgang Wieser, Benjamin R. Biedermann, Kevin Hsu, Bernd Sumpf, Karl-Heinz Hasler, Götz Erbert, Ole B. Jensen, Christian Pedersen, Robert Huber, and Peter E. Andersen,
FDML swept source at 1060 nm using a tapered amplifier, in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIV , Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin, Eds. International Society for Optics and Photonics, Feb.2010. pp. 75541H.
DOI:10.1117/12.842011
Bibtex: BibTeX
@inproceedings{10.1117/12.842011,
author = {Sebastian Marschall and Thomas Klein and Wolfgang Wieser and Benjamin Biedermann and Kevin Hsu and Bernd Sumpf and Karl-Heinz Hasler and G{\"o}tz Erbert and Ole B. Jensen and Christian Pedersen and Robert Huber and Peter E. Andersen},
title = {{FDML swept source at 1060 nm using a tapered amplifier}},
volume = {7554},
booktitle = {Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIV},
editor = {Joseph A. Izatt and James G. Fujimoto and Valery V. Tuchin},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {75541H},
abstract = {We present a novel frequency-swept light source working at 1060nm that utilizes a tapered amplifier as gain
medium. These devices feature significantly higher saturation power than conventional semiconductor optical
amplifiers and can thus improve the limited output power of swept sources in this wavelength range. We
demonstrate that a tapered amplifier can be integrated into a fiber-based swept source and allows for high-speed
FDML operation. The developed light source operates at a sweep rate of 116kHz with an effective average
output power in excess of 30mW. With a total sweep range of 70 nm an axial resolution of 15 μm in air (~11μm in tissue) for OCT applications can be achieved.},
keywords = {optical coherence tomography, swept source, tunable laser, tapered amplifier, fourier domain mode-locking},
year = {2010},
doi = {10.1117/12.842011},
URL = {https://doi.org/10.1117/12.842011}
}

2009

Robert Huber,
Advances in Fourier domain OCT, in 2009 IEEE LEOS Annual Meeting Conference Proceedings , IEEE, Oct.2009. pp. 201-202.
DOI:10.1109/LEOS.2009.5343314
Bibtex: BibTeX
@INPROCEEDINGS{5343314,
  author={Huber, Robert},
  booktitle={2009 IEEE LEOS Annual Meeting Conference Proceedings}, 
  title={Advances in Fourier domain OCT}, 
  year={2009},
  volume={},
  number={},
  pages={201-202},
  abstract={In optical coherence tomography, the introduction of so called ldquoFrequency Domainrdquo techniques, i.e. spectrally resolved detection, had a dramatic impact on these biomedical imaging systems. The current status and future developments will be discussed.},
  keywords={},
  doi={10.1109/LEOS.2009.5343314},
  ISSN={1092-8081},
  month={Oct},}
Michalina Gora, Karol Karnowski, Maciej Szkulmowski, Bartlomiej Kaluzny, Robert Huber, Andrzej M. Kowalczyk, and Maciej Wojtkowski,
Ultra high-speed swept source OCT imaging of the anterior segment of human eye at 200 kHz with adjustable imaging range, Opt. Express , vol. 17, no. 17, pp. 14880-14894, Aug. 2009. Optica Publishing Group.
DOI:10.1364/OE.17.014880
Bibtex: BibTeX
@article{Gora:09,
author = {Michalina Gora and Karol Karnowski and Maciej Szkulmowski and Bartlomiej J. Kaluzny and Robert Huber and Andrzej Kowalczyk and Maciej Wojtkowski},
journal = {Opt. Express},
keywords = {Optical coherence tomography; Lasers, tunable; Ophthalmology; Crystalline lens; High speed imaging; Imaging systems; Ophthalmic imaging; Optical coherence tomography; Three dimensional imaging},
number = {17},
pages = {14880--14894},
publisher = {Optica Publishing Group},
title = {Ultra high-speed swept source OCT imaging of the anterior segment of human eye at 200 kHz with adjustable imaging range},
volume = {17},
month = {Aug},
year = {2009},
url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-17-17-14880},
doi = {10.1364/OE.17.014880},
abstract = {We present an application of in vivo anterior segment imaging of the human eye with an ultrahigh speed swept source OCT instrument. For this purpose, a dedicated OCT system was designed and constructed. This instrument enables axial zooming by automatic reconfiguration of spectral sweep range; an enhanced imaging range mode enables imaging of the entire anterior segment while a high axial resolution mode provides detailed morphological information of the chamber angle and the cornea. The speed of 200,000 lines/s enables high sampling density in three-dimensional imaging of the entire cornea in 250 ms promising future applications of OCT for optical corneal topography, pachymetry and elevation maps. The results of a preliminary quantitative corneal analysis based on OCT data free form motion artifacts are presented. Additionally, a volumetric and real time reconstruction of dynamic processes, like pupillary reaction to light stimulus or blink-induced contact lens movements are demonstrated.},
}
Gesa Palte, Wolfgang Wieser, Benjamin R. Biedermann, Christoph M. Eigenwillig, and Robert Huber,
Fourier domain mode locked (FDML) lasers for polarization sensitive OCT, in Optical Coherence Tomography and Coherence Techniques IV , Peter E. Andersen and Brett E. Bouma, Eds. SPIE, Jul.2009. pp. 73720M.
DOI:10.1117/12.831835
Bibtex: BibTeX
@inproceedings{10.1117/12.831835,
author = {Gesa Palte and Wolfgang Wieser and Benjamin R. Biedermann and Christoph M. Eigenwillig and Robert Huber},
title = {{Fourier domain mode locked (FDML) lasers for polarization sensitive OCT}},
volume = {7372},
booktitle = {Optical Coherence Tomography and Coherence Techniques IV},
editor = {Peter E. Andersen and Brett E. Bouma},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {73720M},
abstract = {A Fourier Domain mode-locked (FDML) laser for polarization sensitive optical coherence tomography (OCT) is
presented. The laser generates an alternating sequence of wavelength sweeps with their polarization states 90° separated
on the Poincare sphere.},
keywords = {Lasers, tunable, optical coherence tomography, lasers, imaging systems, polarization, fiber},
year = {2009},
doi = {10.1117/12.831835},
URL = {https://doi.org/10.1117/12.831835}
}
Benjamin R. Biedermann, Wolfgang Wieser, Christoph M. Eigenwillig, and Robert Huber,
Recent developments in Fourier domain mode locked lasers for optical coherence tomography: imaging at 1310 nm vs. 1550 nm wavelength, Journal of Biophotonics , vol. 2, no. 6-7, pp. 357-363, Jul. 2009.
DOI:10.1002/jbio.200910028
Bibtex: BibTeX
@article{https://doi.org/10.1002/jbio.200910028,
author = {Biedermann, Benjamin R. and Wieser, Wolfgang and Eigenwillig, Christoph M. and Huber, Robert},
title = {Recent developments in Fourier Domain Mode Locked lasers for optical coherence tomography: Imaging at 1310 nm vs. 1550 nm wavelength},
journal = {Journal of Biophotonics},
volume = {2},
number = {6-7},
pages = {357-363},
keywords = {optical coherence tomography, tunable lasers, Fourier domain mode locking, optical frequency domain imaging},
doi = {https://doi.org/10.1002/jbio.200910028},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/jbio.200910028},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/jbio.200910028},
abstract = {Abstract We report on recent progress in Fourier domain mode-locking (FDML) technology. The paper focuses on developments beyond pushing the speed of these laser sources. After an overview of improvements to FDML over the last three years, a brief analysis of OCT imaging using FDML lasers with different wavelengths is presented. For the first time, high speed, high quality FDML imaging at 1550 nm is presented and compared to a system at 1310 nm. The imaging results of human skin for both wavelengths are compared and analyzed. Sample arm optics, power on the sample, heterodyne gain, detection bandwidth, colour cut levels and sample location have been identical to identify the influence of difference in scattering and water absorption. The imaging performance at 1310 nm in human skin is only slightly better and the results suggest that water absorption only marginally affects the penetration depth in human skin at 1550 nm. For several applications this wavelength may be preferred. (© 2009 WILEY-VCH Verlag GmbH \& Co. KGaA, Weinheim)},
year = {2009}
}
Benjamin R. Biedermann, Wolfgang Wieser, Christoph M. Eigenwillig, Thomas Klein, and Robert Huber,
Dispersion, coherence and noise of Fourier Domain Mode Locked (FDML) lasers, in CLEO/Europe - EQEC 2009 - European Conference on Lasers and Electro-Optics and the European Quantum Electronics Conference , IEEE, Jun.2009. pp. 1-1.
DOI:10.1109/CLEOE-EQEC.2009.5192900
Bibtex: BibTeX
@INPROCEEDINGS{5192900,
  author={Biedermann, Benjamin R. and Wieser, Wolfgang and Eigenwillig, Christoph M. and Klein, Thomas and Huber, Robert},
  booktitle={CLEO/Europe - EQEC 2009 - European Conference on Lasers and Electro-Optics and the European Quantum Electronics Conference}, 
  title={Dispersion, coherence and noise of Fourier Domain Mode Locked (FDML) lasers}, 
  year={2009},
  volume={},
  number={},
  pages={1-1},
  abstract={We present a detailed analysis of coherence and noise of the FDML laser, depending on filter drive frequency, detuning and amount of cavity dispersion. The results provide insight into phase and amplitude noise of the laser light itself. We address the following two questions: (1) How much dispersion compensation is necessary for optimum laser performance in FDML for a certain width of the optical band pass filter? (2) How are timing mismatch effects, caused by either detuning of the drive frequency or chromatic dispersion in the cavity of the filter, related to coherence length and noise?},
  keywords={},
  doi={10.1109/CLEOE-EQEC.2009.5192900},
  ISSN={},
  month={June},}
Robert Huber,
State-of-the-art and future of ultrahigh speed OCT, in CLEO/Europe and EQEC 2009 Conference Digest , Optica Publishing Group, Jun.2009. pp. JTuA_3.
DOI:10.1109/CLEOE-EQEC.2009.5191695
Bibtex: BibTeX
@INPROCEEDINGS{5191695,
  author={Huber, Robert},
  booktitle={CLEO/Europe - EQEC 2009 - European Conference on Lasers and Electro-Optics and the European Quantum Electronics Conference}, 
  title={State-of-the-art and future of ultrahigh speed OCT}, 
  year={2009},
  volume={},
  number={},
  pages={1-1},
  abstract={This paper reviews the current status of high speed OCT systems on the different levels of development: commercial, laboratory prototype style and proof of concept type systems. The pro and contra of SD-OCT and SS-OCT are discussed and an analysis of the desired optimum imaging speeds for various applications. SS-OCT systems are used for imaging in highly scattering tissue ~1300 nm, a line rate of 60 MHz was achieved by with SD-OCT.},
  keywords={},
  doi={10.1109/CLEOE-EQEC.2009.5191695},
  ISSN={},
  month={June},}